Journal: Cell

Article Title: Distinct Hippocampal Pathways Mediate Dissociable Roles of Context in Memory Retrieval

doi: 10.1016/j.cell.2016.09.051

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: N/A TTX Latoxan, Valence, France L8503 CNQX Tocris Bioscience, Bristol, UK 1045 R-CPP Tocris Bioscience, Bristol, UK 0247 QX-314 Tocris Bioscience, Bristol, UK 2313 Picrotoxin Sigma-Aldrich P1675 Fetal bovine serum (FBS) Hyclone SH30070.03 Critical Commercial Assays Rapid DNA Ligation Kit Roche 11 635 379 001 Plasmid DNA Purification MACHEREY-NAGEL N/A Endotoxin-free Plasmid DNA Purification MACHEREY-NAGEL N/A In-Fusion HD cloning kit Clontech 639649 Experimental Models: Cell Lines B7GG Callaway E., Salk Institute N/A BHK-EnVA Callaway E., Salk Institute N/A HEK293-TVA Young J., Salk Institute N/A HEK293T Callaway E., Salk Institute N/A Experimental Models: Organisms/Strains C57BL6/J Harlan Ltd N/A hCAR (transgenic expression of a truncated human receptor for CAV-Cre) Pettersson, S., Karolinska Institutet, Tallone et al., 2001 N/A LSL-R26 Tva-lacZ (Rosa-LSL-TVA, Cre-dependent TVA expression) Saur, D., Technische Universitat Munchen, Seidler et al., 2008 N/A GAD2 Cre Huang, Z. J., Cold Spring Harbor Laboratory, Taniguchi et al., 2011 N/A GAD2 Cre ::LSL-R26 Tva-lacZ (GAD2-Cre-TVA) This paper N/A C57BL6/J::hCAR (F1) This paper N/A Recombinant DNA pSADΔG-ArchT-GFP This paper N/A pAAV-EF1α-DIO-rabG This paper N/A pcDNA-B19N Callaway E., Salk Institute N/A pcDNA-B19P Callaway E., Salk Institute N/A pcDNA-B19L Callaway E., Salk Institute N/A pcDNA-B19G Callaway E., Salk Institute N/A pSADΔG-F3 Callaway E., Salk Institute N/A Sequence-Based Reagents NheI-covering forward primer for Rabies G (GGCCAAGCTAGCATGGTTCCTCAGGCTCTCCTGT) Sigma-Aldrich N/A AscI-covering reverse primer for Rabies G (TTAAGGCGCGCCTTACAGTCTGGTCTCACCCCC) Sigma-Aldrich N/A Software and Algorithms ImageJ NIH https://imagej.nih.gov/ij/ Fiji 1.48 http://fiji.sc/ TrackEM plugin in Fiji 1.48 Cardona A. and Saalfeld S. http://imagej.net/TrakEM2 Turboreg plugin in ImageJ Thévenaz et al., 1998 N/A GraphPad Prism GraphPad Software Inc http://www.graphpad.com/scientific-software/prism/ Imaris 7.3.1 Bitplane www.bitplane.com/imaris/imaris MATLAB The MathWorks, Inc. http://ch.mathworks.com/products/matlab IGOR Pro WaveMetrics https://www.wavemetrics.com/ Neuromatic plug-in for IGOR Pro Jason Rothman https://www.neuromatic.thinkrandom.com Zen softwares Zeiss http://www.zeiss.com/corporate/en_de/global/home.html pClamp 10 Axon instruments https://www.moleculardevices.com/ Other Optic fibers Thorlabs BFH48-200 Custom built optrode Lüthi A., FMI, Basel; Wolff et al., 2014 N/A Miniature epifluorescence microscope Inscopix nVista HD, version 2 Gradient index lens Inscopix GLP-0673 Blue (465 nm, 10 mW) and yellow (590 nm, 2.5 mW) LED with LED-driver LD-1 Plexon N/A Yellow laser (589 nm wavelength) CNI Lasers, China MBL589 Open in a separate window KEY RESOURCES TABLE

Techniques: Recombinant, Plasmid Preparation, DNA Ligation, DNA Purification, Clone Assay, Transgenic Assay, Expressing, Sequencing, Software, Microscopy

Journal: Immunoinformatics (Amsterdam, Netherlands)

Article Title: CelltrackR: An R package for fast and flexible analysis of immune cell migration data ☆

doi: 10.1016/j.immuno.2021.100003

Figure Lengend Snippet: Comparison between celltrackR and existing software for cell migration data. The table lists accessibility and implemented functionalities for each available resource (as assessed from the online documentation provided by the software authors).[ 17 - 25 ]

Article Snippet: *With PACT, Track Manager, and Motion Profiler plugins , R package (RP), Java GUI (JG), ImageJ/Icy plugins (IP), Standalone (S), Matlab plugin (MP) , , , , automated/manual (A/M) track/image-based (TB/IB), *only based on distance/velocity , , , , , , , , , , , , , , , , , , , , , , , , , only with respect to specific point/direction (s), Hotelling's test (H), Rayleigh Test (R) , , , , , , pre-built plots only (PB), custom plots of any metric (C) , , , , *Using any statistical testing options from the R language , , , .

Techniques: Comparison, Software, Migration, Chemotaxis Assay

Journal: Cell

Article Title: Distinct Hippocampal Pathways Mediate Dissociable Roles of Context in Memory Retrieval

doi: 10.1016/j.cell.2016.09.051

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: N/A TTX Latoxan, Valence, France L8503 CNQX Tocris Bioscience, Bristol, UK 1045 R-CPP Tocris Bioscience, Bristol, UK 0247 QX-314 Tocris Bioscience, Bristol, UK 2313 Picrotoxin Sigma-Aldrich P1675 Fetal bovine serum (FBS) Hyclone SH30070.03 Critical Commercial Assays Rapid DNA Ligation Kit Roche 11 635 379 001 Plasmid DNA Purification MACHEREY-NAGEL N/A Endotoxin-free Plasmid DNA Purification MACHEREY-NAGEL N/A In-Fusion HD cloning kit Clontech 639649 Experimental Models: Cell Lines B7GG Callaway E., Salk Institute N/A BHK-EnVA Callaway E., Salk Institute N/A HEK293-TVA Young J., Salk Institute N/A HEK293T Callaway E., Salk Institute N/A Experimental Models: Organisms/Strains C57BL6/J Harlan Ltd N/A hCAR (transgenic expression of a truncated human receptor for CAV-Cre) Pettersson, S., Karolinska Institutet, Tallone et al., 2001 N/A LSL-R26 Tva-lacZ (Rosa-LSL-TVA, Cre-dependent TVA expression) Saur, D., Technische Universitat Munchen, Seidler et al., 2008 N/A GAD2 Cre Huang, Z. J., Cold Spring Harbor Laboratory, Taniguchi et al., 2011 N/A GAD2 Cre ::LSL-R26 Tva-lacZ (GAD2-Cre-TVA) This paper N/A C57BL6/J::hCAR (F1) This paper N/A Recombinant DNA pSADΔG-ArchT-GFP This paper N/A pAAV-EF1α-DIO-rabG This paper N/A pcDNA-B19N Callaway E., Salk Institute N/A pcDNA-B19P Callaway E., Salk Institute N/A pcDNA-B19L Callaway E., Salk Institute N/A pcDNA-B19G Callaway E., Salk Institute N/A pSADΔG-F3 Callaway E., Salk Institute N/A Sequence-Based Reagents NheI-covering forward primer for Rabies G (GGCCAAGCTAGCATGGTTCCTCAGGCTCTCCTGT) Sigma-Aldrich N/A AscI-covering reverse primer for Rabies G (TTAAGGCGCGCCTTACAGTCTGGTCTCACCCCC) Sigma-Aldrich N/A Software and Algorithms ImageJ NIH https://imagej.nih.gov/ij/ Fiji 1.48 http://fiji.sc/ TrackEM plugin in Fiji 1.48 Cardona A. and Saalfeld S. http://imagej.net/TrakEM2 Turboreg plugin in ImageJ Thévenaz et al., 1998 N/A GraphPad Prism GraphPad Software Inc http://www.graphpad.com/scientific-software/prism/ Imaris 7.3.1 Bitplane www.bitplane.com/imaris/imaris MATLAB The MathWorks, Inc. http://ch.mathworks.com/products/matlab IGOR Pro WaveMetrics https://www.wavemetrics.com/ Neuromatic plug-in for IGOR Pro Jason Rothman https://www.neuromatic.thinkrandom.com Zen softwares Zeiss http://www.zeiss.com/corporate/en_de/global/home.html pClamp 10 Axon instruments https://www.moleculardevices.com/ Other Optic fibers Thorlabs BFH48-200 Custom built optrode Lüthi A., FMI, Basel; Wolff et al., 2014 N/A Miniature epifluorescence microscope Inscopix nVista HD, version 2 Gradient index lens Inscopix GLP-0673 Blue (465 nm, 10 mW) and yellow (590 nm, 2.5 mW) LED with LED-driver LD-1 Plexon N/A Yellow laser (589 nm wavelength) CNI Lasers, China MBL589 Open in a separate window KEY RESOURCES TABLE

Techniques: Recombinant, Polymer, Plasmid Preparation, DNA Ligation, DNA Purification, Cloning, Transgenic Assay, Expressing, Sequencing, Software, Microscopy

Journal: Cell

Article Title: Distinct Hippocampal Pathways Mediate Dissociable Roles of Context in Memory Retrieval

doi: 10.1016/j.cell.2016.09.051

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: N/A TTX Latoxan, Valence, France L8503 CNQX Tocris Bioscience, Bristol, UK 1045 R-CPP Tocris Bioscience, Bristol, UK 0247 QX-314 Tocris Bioscience, Bristol, UK 2313 Picrotoxin Sigma-Aldrich P1675 Fetal bovine serum (FBS) Hyclone SH30070.03 Critical Commercial Assays Rapid DNA Ligation Kit Roche 11 635 379 001 Plasmid DNA Purification MACHEREY-NAGEL N/A Endotoxin-free Plasmid DNA Purification MACHEREY-NAGEL N/A In-Fusion HD cloning kit Clontech 639649 Experimental Models: Cell Lines B7GG Callaway E., Salk Institute N/A BHK-EnVA Callaway E., Salk Institute N/A HEK293-TVA Young J., Salk Institute N/A HEK293T Callaway E., Salk Institute N/A Experimental Models: Organisms/Strains C57BL6/J Harlan Ltd N/A hCAR (transgenic expression of a truncated human receptor for CAV-Cre) Pettersson, S., Karolinska Institutet, Tallone et al., 2001 N/A LSL-R26 Tva-lacZ (Rosa-LSL-TVA, Cre-dependent TVA expression) Saur, D., Technische Universitat Munchen, Seidler et al., 2008 N/A GAD2 Cre Huang, Z. J., Cold Spring Harbor Laboratory, Taniguchi et al., 2011 N/A GAD2 Cre ::LSL-R26 Tva-lacZ (GAD2-Cre-TVA) This paper N/A C57BL6/J::hCAR (F1) This paper N/A Recombinant DNA pSADΔG-ArchT-GFP This paper N/A pAAV-EF1α-DIO-rabG This paper N/A pcDNA-B19N Callaway E., Salk Institute N/A pcDNA-B19P Callaway E., Salk Institute N/A pcDNA-B19L Callaway E., Salk Institute N/A pcDNA-B19G Callaway E., Salk Institute N/A pSADΔG-F3 Callaway E., Salk Institute N/A Sequence-Based Reagents NheI-covering forward primer for Rabies G (GGCCAAGCTAGCATGGTTCCTCAGGCTCTCCTGT) Sigma-Aldrich N/A AscI-covering reverse primer for Rabies G (TTAAGGCGCGCCTTACAGTCTGGTCTCACCCCC) Sigma-Aldrich N/A Software and Algorithms ImageJ NIH https://imagej.nih.gov/ij/ Fiji 1.48 http://fiji.sc/ TrackEM plugin in Fiji 1.48 Cardona A. and Saalfeld S. http://imagej.net/TrakEM2 Turboreg plugin in ImageJ Thévenaz et al., 1998 N/A GraphPad Prism GraphPad Software Inc http://www.graphpad.com/scientific-software/prism/ Imaris 7.3.1 Bitplane www.bitplane.com/imaris/imaris MATLAB The MathWorks, Inc. http://ch.mathworks.com/products/matlab IGOR Pro WaveMetrics https://www.wavemetrics.com/ Neuromatic plug-in for IGOR Pro Jason Rothman https://www.neuromatic.thinkrandom.com Zen softwares Zeiss http://www.zeiss.com/corporate/en_de/global/home.html pClamp 10 Axon instruments https://www.moleculardevices.com/ Other Optic fibers Thorlabs BFH48-200 Custom built optrode Lüthi A., FMI, Basel; Wolff et al., 2014 N/A Miniature epifluorescence microscope Inscopix nVista HD, version 2 Gradient index lens Inscopix GLP-0673 Blue (465 nm, 10 mW) and yellow (590 nm, 2.5 mW) LED with LED-driver LD-1 Plexon N/A Yellow laser (589 nm wavelength) CNI Lasers, China MBL589 Open in a separate window KEY RESOURCES TABLE

Techniques: Recombinant, Polymer, Plasmid Preparation, DNA Ligation, DNA Purification, Clone Assay, Transgenic Assay, Expressing, Sequencing, Software, Microscopy